Command Line Fundamentals                                                              
                                                                                                                                                                              
                                                                      Getting Started with the Terminal                                                                       
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
              ██ What is the Terminal?                                                                                                                                        
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Terminal/Shell                                                                                                                                               
                                                                                                                                                                              
              Open a terminal.                                                                                                                                                
                                                                                                                                                                              
                 •  When you type something into the command line, a program called "the shell" interprets it and does something                                              
                 •  So, there are a couple of things that are required for the shell to correctly interpret what you want to happen...                                        
                    ◦  Command line entries start with a command name, followed by options and arguments                                                                      
                    ◦  Some commands don't need any options or arguments                                                                                                      
                    ◦  The command name, options, and arguments are separated by spaces                                                                                       
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ First Commands                                                                                                                                               
                                                                                                                                                                              
              Let's try some basic commands:                                                                                                                                  
                                                                                                                                                                              
              date - displays the current date and time                                                                                                                 
              whoami - shows your username                                                                                                                              
              clear - clears the terminal screen                                                                                                                        
              pwd - print working directory (where you are)                                                                                                             
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                    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              ██ Tab Completion and Command History                                                                                                                           
                                                                                                                                                                              
              Two of the most useful features of the shell:                                                                                                                   
                                                                                                                                                                              
              Tab Completion                                                                                                                                                  
                                                                                                                                                                              
                 •  Start typing a command or filename and press Tab                                                                                                          
                 •  The shell will complete it for you (or show options)                                                                                                      
                 •  Saves time and prevents typos                                                                                                                             
                                                                                                                                                                              
              Command History                                                                                                                                                 
                                                                                                                                                                              
                 •  Press Up Arrow to see previous commands                                                                                                                   
                 •  Press Down Arrow to go forward through history                                                                                                            
                 •  You can edit and re-run old commands                                                                                                                      
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
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              ██ Where are my files?                                                                                                                                          
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Navigating                                                                                                                                                   
                                                                                                                                                                              
                 •  Your computer has a set of files organized into directories                                                                                               
                 •  Example:                                                                                                                                                  
                    ◦  Open a file browser                                                                                                                                    
                    ◦  Open a terminal                                                                                                                                        
                                                                                                                                                                              
              Commands:                                                                                                                                                       
                                                                                                                                                                              
              pwd - print the directory you are currently in                                                                                                            
              ls - list the files and directories that are in the current directory                                                                                     
              cd - change directories                                                                                                                                   
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                    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              ██ Demo                                                                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Anatomy of a Command Entry: Command Arguments and Options                                                                                                    
                                                                                                                                                                              
                 •  Commands can take arguments                                                                                                                               
                 •  The command does something with/to the argument                                                                                                           
                    ◦  Examples:                                                                                                                                              
              cd Desktop                                                                                                                                          
              ls Desktop                                                                                                                                          
                 •  Options change the behavior of a command                                                                                                                  
                    ◦  Examples:                                                                                                                                              
              ls -l                                                                                                                                               
              ls -l -a                                                                                                                                            
                 •  So, when you type in a command you are telling the shell:                                                                                                 
                    ◦  What you want to do (the command)                                                                                                                      
                    ◦  What you want to do it to (the argument(s))                                                                                                            
                    ◦  How you want it done (the option(s))                                                                                                                   
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
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              ██ Looking at Files                                                                                                                                             
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Plain Text Files                                                                                                                                             
                                                                                                                                                                              
                 •  A lot of work we are going to do will be centered around creating, reading, and modifying plain text files                                                
                 •  What is a plain text file?                                                                                                                                
                    ◦  Open up "LibreOffice" and create a new document                                                                                                        
                    ◦  Open up Text Editor, and create a new file                                                                                                             
                    ◦  Now open a terminal and cd to the directory that you just saved them in                                                                                
                    ◦  Run the cat command on each file                                                                                                                       
                 •  Plain text files contain just text                                                                                                                        
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Sandboxes                                                                                                                                                    
                                                                                                                                                                              
                 •  I will create "Sandboxes" for us to practice in.                                                                                                          
                 •  These are just folders with files that are safe to delete/move/etc.                                                                                       
                 •  Let's download and unpack the Module 01 sandbox.                                                                                                          
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Looking at File Contents                                                                                                                                     
                                                                                                                                                                              
              There are several commands for looking at the content of files:                                                                                                 
                                                                                                                                                                              
              cat - print contents of file(s) to screen                                                                                                                 
              head - print first 10 lines of file(s) to screen                                                                                                          
              tail - print last 10 lines of file(s) to screen                                                                                                           
              less - show the contents of a file in a "pager"                                                                                                           
                    ◦  Use arrow keys or Page Up/Down to scroll                                                                                                               
                    ◦  Press q to quit                                                                                                                                        
              wc - print the number of lines, words, and characters in the file                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                    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              ██ WARNING                                                                                                                                                      
                                                                                                                                                                              
              If you enter any of these commands without a filename, they will go into "stdin mode"                                                                           
                                                                                                                                                                              
                                                                                                                                                                              
                                                                $ cat                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
              You have to press Ctrl-C to exit                                                                                                                                
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Demo                                                                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Basic File Operations                                                                                                                                        
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Creating/Deleting/Moving Files and Directories                                                                                                               
                                                                                                                                                                              
              Commands:                                                                                                                                                       
                                                                                                                                                                              
              mkdir - make a new directory                                                                                                                              
              touch - create an empty file (or update timestamp)                                                                                                        
              cp - copy a file or directory                                                                                                                             
              mv - move a file or directory (also used to rename)                                                                                                       
              rm - remove a file or directory                                                                                                                           
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                    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              ██ Demo                                                                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Be Careful with rm!                                                                                                                                          
                                                                                                                                                                              
              The rm command is permanent                                                                                                                                     
                                                                                                                                                                              
                 •  There is no "Recycle Bin" or "Trash" on the command line                                                                                                  
                 •  Once a file is removed, it's gone                                                                                                                         
                                                                                                                                                                              
              Tips:                                                                                                                                                           
                                                                                                                                                                              
                 •  Double-check before running rm                                                                                                                            
                 •  Start with ls to see what you're about to delete                                                                                                          
                 •  Use rm -i for interactive mode (asks for confirmation)                                                                                                    
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Getting Help                                                                                                                                                 
                                                                                                                                                                              
              Most commands accept a --help and/or -h option.                                                                                                                 
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Getting Help: Manual Pages                                                                                                                                   
                                                                                                                                                                              
                 •  All of these commands come with an instruction manual                                                                                                     
                 •  We can read the manual using the man command                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                $ man ls                                                                                                      
                                                                $ man grep                                                                                                    
                                                                $ man rm                                                                                                      
                                                                                                                                                                              
                                                                                                                                                                              
                 •  Use arrow keys or Page Up/Down to scroll                                                                                                                  
                 •  Press q to quit                                                                                                                                           
                 •  Search with / followed by search term                                                                                                                     
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
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              ██ Spaces in Filenames                                                                                                                                          
                                                                                                                                                                              
                 •  Spaces in file or directory names cause a problem because the shell uses spaces to separate the command name, command options, and command                
                    arguments                                                                                                                                                 
                 •  If you try to remove a file named Report 1.pdf with rm Report 1.pdf, the rm command will try to remove two files, one named Report, and one               
                    named 1.pdf                                                                                                                                               
                 •  There are two ways to fix this:                                                                                                                           
                    ◦  Put quotes around the name: rm "Report 1.pdf"                                                                                                          
                    ◦  Escape the space (put a backslash in front of it): rm Report\ 1.pdf                                                                                    
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Demo                                                                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Wildcards: The * Glob                                                                                                                                        
                                                                                                                                                                              
                 •  Sometimes you want to refer to multiple files at once                                                                                                     
                 •  The * character is a wildcard that matches any number of characters in a filename                                                                         
                 •  The shell expands * before the command runs                                                                                                               
                                                                                                                                                                              
              Examples:                                                                                                                                                       
                                                                                                                                                                              
              ls *.txt - list all files ending in .txt                                                                                                                  
              ls data-* - list all files starting with data-                                                                                                            
              cat *.log - print contents of all .log files                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                    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              ██ Important: The Shell Does the Expanding                                                                                                                      
                                                                                                                                                                              
                 •  The command never sees the *                                                                                                                              
                 •  The shell replaces it with the list of matching filenames first                                                                                           
                 •  You can see exactly what the shell will expand by using echo:                                                                                             
                                                                                                                                                                              
                                                                                                                                                                              
                                                                $ echo *.txt                                                                                                  
                                                                file-1.txt file-2.txt notes.txt                                                                               
                                                                                                                                                                              
                                                                $ echo data-*                                                                                                 
                                                                data-001.csv data-002.csv data-003.csv                                                                        
                                                                                                                                                                              
                                                                                                                                                                              
                 •  This is a useful trick for checking what files will be matched before running a command like rm                                                           
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
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              ██ Demo                                                                                                                                                         
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Practice                                                                                                                                                     
                                                                                                                                                                              
              Download a practice directory and perform the following tasks:                                                                                                  
                                                                                                                                                                              
                 1. Navigate to the sandbox for this module.                                                                                                                  
                 2. How many files are in the top-level sandbox directory?                                                                                                    
                 3. How many directories are in the top-level sandbox directory?                                                                                              
                 4. Are there any hidden files?                                                                                                                               
                 5. What is in the Easter Egg?                                                                                                                                
                 6. Rename the file 'file-1.txt' to 'file-01.txt'                                                                                                             
                 7. Create a directory named "docs" and move the README in it.                                                                                                
                 8. Create a directory named "backups" and copy the "data", "config", and "log" directories into it.                                                          
                 9. Create a directory named "old" and move the "electron_scattering" and "simulations" directories into it.                                                  
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                  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              ██ Summary                                                                                                                                                      
                                                                                                                                                                              
              So far we have learned:                                                                                                                                         
                                                                                                                                                                              
                 •  What the terminal and shell are                                                                                                                           
                 •  How to navigate the filesystem (pwd, ls, cd)                                                                                                              
                 •  How to view file contents (cat, head, tail, less)                                                                                                         
                 •  How to create and delete files and directories (mkdir, touch, cp, mv, rm)                                                                                 
                 •  How to get help (man)                                                                                                                                     
                 •  How to handle spaces in filenames                                                                                                                         
                 •  How to use * to match multiple files (and echo to preview matches)                                                                                        
                                                                                                                                                                              
              Next we'll see how to save these commands in shell scripts!                                                                                                     
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Homework                                                                                                                                                     
                                                                                                                                                                              
              Let's walk through how to do the homework.                                                                                                                      
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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              ██ Last Slide                                                                                                                                                   
                                                                                                                                                                              
              This space intentionally left blank                                                                                                                             
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                                                                              
                                                                                                                              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